Installation and running an example
=====================
mageml domain-specific java API has been generated by ISIS tools.
In order to run and examine mageml Package on Windows or on Linux 
you are required to download the latest 1.0.0 version from the official BioComp website of ISIS and install it on your computer: 
 -	mageml Package 
	http://www.isis.vanderbilt.edu/Projects/biocomp/downloads.asp#mageml_P 

 -	jUdm Package 
	http://www.isis.vanderbilt.edu/Projects/biocomp/downloads.asp#judm_P

Unzip these zip files into an installation directory, <install_dir>. At this point, you should see two directories under the installation directory: <install_dir>\judm and <install_dir>\mageml. Now, you have to create a new environment variable by opening System in Control Panel and clicking Environment Variables on the Advanced tab, assuming that you are using Windows. The name of the new environment variable must be UDM_PATH and the value of this variable must be the installation directory of the jUdm package, for example, <install_dir>\judm. If you are using Linux, than you are required to add the following line to your .bashrc:

  export UDM_PATH=<install_dir>\judm

The <install_dir>\mageml directory contains a runtest.cmd file for Windows platform and runtest.sh file Linux platform. Assuming that you unzipped the judm and mageml files and set the enviroment variable properly, you should see some JUNIT test running. If there are error messages, please make sure that the .cmd or .sh file refers to existing folders and jars.