Download an installation instructions ======================================= jUDM is the Java Wrapper for the UDM Core Technology developed at ISIS. To integrate the jUDM in Dashboard on Linux, you need to download and install the following module in Dashboard: - The latest release of the jUdm Data Type APIs collection for Dashboard is 1.0.3 and is available from the ISIS BioComp web site: http://www.isis.vanderbilt.edu/Projects/biocomp/downloads.asp?req=downloads/dashboard/judm_api-win-1.0.3.nbm . For module installation instructions see the BioSpice web site (https://community.biospice.org). The jUDM Data Type APIs contains the following collection of jUDM auto-generated Data Types: - GeneTF - GeneTRE - SBML2Ex The jUDM Data Type APIs for Windows depends on the following Dashboard modules: - Dashboard Core Module > 6.0.3 - Non-Java Module Installation Support > 1.0.3 - UDM Custom Install for Windows > 1.0.3 Again, the first two modules can be downloaded by using the Update Center (Click on "Update Center" on the "Tools" Menu in Dashboard), or you can actually go to http://updates.biospice.org/ in the browser of your choice and see the actual contents of the "Update Center". In addition, you need to donwload and install the UDM Custom Install for Linux from the ISIS BioComp website and install it manually rather than via Dashboard: - UDM Custom Install for Linux The latest release of the UDM Custom Install for Linux is 1.0.3 and is available from the ISIS BioComp web site: http://www.isis.vanderbilt.edu/Projects/biocomp/downloads.asp?req=downloads/dashboard/judm_install_linux-1.0.3.zip . The zipped package contains only one file, a library file called libUdmSwig.so. This library depends on the following libraries, so make sure that your system has these libraries installed on it: - Xalan package, version Xalan-C 1.5.2 - Xerces package, version Xerces-C 2.2.0 - ZLib package , version 1.2.1 - ZLib Minizip package , Version 1.2.1 Extract the content of this package into the /usr/lib directory. Please note that you have to be the root user on the Linux machine in order to accompilsh this. In some Linux configuration the /usr/lib folder is in the PATH or in the LD_LIBRARY_PATH, but it is advised to create and export a UDM_PATH environment variable that points to the /usr folder.